Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs370443017 chr13:54163256 G/GT 2.87E-5 171 25.87 19.72 21.23 KM Plot
PCPG rs370603588 chr13:64109146 ATT/A 6.87E-8 178 25.87 22.63 18.13 KM Plot
PCPG rs370821570 chr11:18144490 G/A 3.76E-5 175 27.27 24.82 6.7 KM Plot
PCPG rs370907757 chr10:131941048 CAATCTTCCAGTACCGCCTAGGACCCCTT/C 0 175 25.4 25.97 3.17 KM Plot
PCPG rs370964375 chr5:50603965 T/C 8.19E-5 173 25.17 24.62 31.35 KM Plot
PCPG rs371236 chr17:3241329 A/G 0.000207 173 18.1 25.87 26.88 KM Plot
PCPG rs371263878 chr12:56754371 TTA/T 0.000286 170 25.67 30.93 4.23 KM Plot
PCPG rs371839565 chr17:1427540 A/G 1.39E-5 175 24.62 26.73 25.17 KM Plot
PCPG rs372371129 chr13:37659392 GTT/G 0.000361 170 4.17 23.88 27.2 KM Plot
PCPG rs372872191 chr16:1773016 GTTTGTTTTTGTT/G 0 170 25.6 24.1 2.93 KM Plot
PCPG rs372939278 chr17:36996157 TAC/T 4.5E-6 174 25.17 36.33 24.52 KM Plot
PCPG rs3729851 chr8:11612842 G/A 7.44E-11 172 25.75 21.9 8.13 KM Plot
PCPG rs373051007 chr16:90074427 A/C 7.45E-9 177 25.77 20.37 6.62 KM Plot
PCPG rs3731620 chr2:24262060 G/A 0.000118 177 25.28 26.57 17.43 KM Plot
PCPG rs3735155 chr7:66407130 G/T 0.000206 177 24.7 28.42 33.17 KM Plot